feat(nvim): reorganize and modernize Neovim configuration

- Remove deprecated config files: git-ref.lua, git-signs.lua, diffview-config.lua, lsp-lines-config.lua, neotree-config.lua, fidget-spinner.lua, silicon-config.lua, telescope-config.lua, llm.lua
- Add new configuration files: diagnostics-config.lua, git-config.lua, llm-config.lua, snacks-config.lua
- Update existing config files: base.lua, dap-config.lua, init.lua, lsp-config.lua, lualine-config.lua, noice-config.lua, octo-config.lua, toggleterm-config.lua, which-key-config.lua
- Update nvim and opencode module configurations

modules/home/programs/terminal/opencode/default.nix

@@ -61,7 +61,7 @@ in
           gopls = {
             type = "local";
             command = [
-              "gopls"
+              "${pkgs.gopls}/bin/gopls"
               "mcp"
             ];
             enabled = true;